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In Coral Fossils, Searching for the First Glow of Bioluminescence
A new study resets the timing for the emergence of bioluminescence back to millions of years earlier than previously thought.
By Sam Jones
Bioluminescence is used throughout the animal kingdom, particularly in marine environments, to lure prey, startle predators and even act as camouflage in the surrounding light .
“We always say it’s light-limited in the deep sea, but there are a lot of organisms that produce their own light,” said Andrea Quattrini , a zoologist at the Smithsonian National Museum of Natural History in Washington.
The dazzling glow of bioluminescence is common in Octocorallia, also known as octocorals, a class of over 3,000 Anthozoa species including sea fans, sea pens and soft corals. The prevalence of bioluminescence in these sessile animals makes a lot of sense, Dr. Quattrini said: “They settle somewhere and they’re there.”
How long organisms have been able to emit light is at the center of recent research by Dr. Quattrini and colleagues. Their latest study, published Tuesday in the journal Proceedings of the Royal Society B , resets the timing for the emergence of bioluminescence back to about 540 million years ago, from the existing understanding that it appeared in small marine crustaceans 267 million years ago .
The researchers based their finding on recent octocoral evolutionary tree work, octocoral fossils and modeling to trace the ancestral past of the tiny organisms.
Bioluminescence is believed to have evolved nearly 100 times across history , caused by a simple chemical reaction, when a light-producing molecule called a luciferin reacts with an enzyme called luciferase.
“This ability to bioluminesce is giving these animals some type of survival or fitness advantage,” said Danielle DeLeo , the lead author on the study and a biologist affiliated with Florida International University and the Smithsonian National Museum of Natural History.
Dr. DeLeo was first captivated by the remarkable glow over a decade ago, while studying the impact of the 2010 Deepwater Horizon oil spill on deep sea communities. Descending a thousand meters below the surface in a submersible, she recalled, “you look out the window and all you see is bioluminescence.”
Now she studies bioluminescence in a range of invertebrates — including deep sea shrimp that spew bioluminescent vomit — and for years has been interested in when this basic yet stunning form of communication first emerged.
Setting the stage to answer that question, in 2022, Dr. Quattrini and her former adviser, Catherine McFadden at Harvey Mudd College in California, who is also an author on the new study, revised the octocoral tree of life based on new genetic data.
In the new study, the researchers incorporated dated octocoral fossils to determine when branches on the tree diverged.
They then collected data on the presence or absence of bioluminescence in as many of those species as possible, pulling from previous research as well as their continuing work. From there, they used a series of statistical models to work back in time, over hundreds of millions of years, to calculate the probability of bioluminescence for each common ancestor on the tree.
Every iteration of the analysis landed them at the same conclusion: that bioluminescence first popped up in the common ancestor of octocorals approximately 540 million years ago, around the beginning of the Cambrian era.
This was just before or at the start of the Cambrian explosion , when a huge number of new, more complex species arose.
“Light-sensing had already evolved by then,” but not quite in the form of eyes, said Elena Bollati , a marine biologist at the University of Copenhagen who was not involved in the study. “Predators weren’t really common before the Cambrian explosion either,” she added, “so this has interesting implications regarding the original function of bioluminescence.”
This work lends support to a longstanding theory that — because the chemical reaction underlying bioluminescence uses up oxygen — bioluminescence first evolved as a defense mechanism against the production of dangerous oxygen-containing molecules called free radicals. Glowing may have just been a byproduct but, as it turned out, a useful one.
“You can take care of oxygen and you can make light and you can perhaps deter predators or attract prey, and then you’re going to be successful into future generations,” Dr. Quattrini said.
Now the researchers are focused on a genetic test that, using just a small piece of tissue, will assess if an animal’s luciferase enzyme is functional, an indicator that it can bioluminesce. This technique will remove the need to collect an entire octocoral colony to physically test if it glows, said Dr. DeLeo, helping protect these creatures from the potential threats of oil drilling, fishing and other anthropogenic hazards.
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Uog launches its first international marine biological survey.
The University of Guam launched its first Bioblitz, an international collaboration to catalog the diversity of marine organisms found along the coasts of Guam from February 2 - 22, 2024.
- Dr. Gustav Paulay, Florida Museum
- Dr. Justin Scioli, Smithsonian Marine Station in Florida
- Dr. Kristine White, Georgia College & State University
- Dr. Barbara Mikac, University of Bologna
- Dr. Svetlana Maslakova, University of Oregon
- Dr. Ryutaro Goto, Kyoto Museum
- Shawn Wiedrick, Los Angeles County Museum
- John Slapcinsky, Florida Museum
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The University of Guam is a U.S. Land Grant and Sea Grant Institution accredited by the WASC Senior College and University Commission. UOG is an equal opportunity provider and employer committed to diversity, equity and inclusion through island wisdom values of inadahi yan inagofli'e: respect, compassion, and community.
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- Published: 30 June 2022
Priorities for ocean microbiome research
- Tara Ocean Foundation ,
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- European Molecular Biology Laboratory (EMBL) &
European Marine Biological Resource Centre - European Research Infrastructure Consortium (EMBRC-ERIC)
Nature Microbiology volume 7 , pages 937–947 ( 2022 ) Cite this article
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- Environmental sciences
- Water microbiology
Microbial communities have essential roles in ocean ecology and planetary health. Microbes participate in nutrient cycles, remove huge quantities of carbon dioxide from the air and support ocean food webs. The taxonomic and functional diversity of the global ocean microbiome has been revealed by technological advances in sampling, DNA sequencing and bioinformatics. A better understanding of the ocean microbiome could underpin strategies to address environmental and societal challenges, including achievement of multiple Sustainable Development Goals way beyond SDG 14 ‘life below water’. We propose a set of priorities for understanding and protecting the ocean microbiome, which include delineating interactions between microbiota, sustainably applying resources from oceanic microorganisms and creating policy- and funder-friendly ocean education resources, and discuss how to achieve these ambitious goals.
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Acknowledgements
We thank R. Zaayman-Gallant, T. Rauscher and F. Ibarbalz for preparation of the figures, and the European Union’s Horizon 2020 research and innovation project AtlantECO, under grant agreement no. 862923. This article is contribution number 131 of Tara Oceans.
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Peer Bork, Stephanie Kandels, Rainer Pepperkok, Detlev Arendt, Josipa Bilic, Edith Heard, Brendan Rouse & Jessica Vamathevan
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Matthew B. Sullivan
Department of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, ETH Zürich, Zurich, Switzerland
Shinichi Sunagawa
European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton, UK
Robert Finn
Plentzia Marine Station (PiE-UPV/EHU), University of the Basque Country (UPV/EHU), Plentzia, Spain
Ibon Cancio
Marine Biological Association of the UK and School of Biological and Marine Sciences, University of Plymouth, Plymouth, UK
Michael Cunliffe
EMBRC ERIC, Paris, France
Anne Emmanuelle Kervella, Nicolas Pade & Ioulia Santi
University of Gothenburg, Gothenburg, Sweden
Matthias Obst
Centro de Ciências do Mar, Universidade do Algarve, Faro, Portugal
Deborah M. Power
Shanghai Ocean University International Center for Marine Studies, Shanghai, China
Hellenic Centre for Marine Research (HCMR), Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Heraklion, Greece
Ioulia Santi
University of Bergen, Bergen, Norway
Tatiana Margo Tsagaraki
Royal Belgian Institute for Natural Sciences, Brussels, Belgium
Jan Vanaverbeke
Tara Ocean Foundation
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- , Etienne Bourgois
- , Adam Gristwood
- & Romain Troublé
Tara Oceans
- , Peer Bork
- , Emmanuel Boss
- , Chris Bowler
- , Marko Budinich
- , Samuel Chaffron
- , Colomban de Vargas
- , Tom O. Delmont
- , Damien Eveillard
- , Lionel Guidi
- , Daniele Iudicone
- , Stephanie Kandels
- , Hélène Morlon
- , Fabien Lombard
- , Rainer Pepperkok
- , Juan José Pierella Karlusich
- , Gwenael Piganeau
- , Antoine Régimbeau
- , Guilhem Sommeria-Klein
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European Molecular Biology Laboratory (EMBL)
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- , Robert Finn
- , Edith Heard
- , Brendan Rouse
- & Jessica Vamathevan
- Raffaella Casotti
- , Ibon Cancio
- , Michael Cunliffe
- , Anne Emmanuelle Kervella
- , Wiebe H. C. F. Kooistra
- , Matthias Obst
- , Nicolas Pade
- , Deborah M. Power
- , Ioulia Santi
- , Tatiana Margo Tsagaraki
- & Jan Vanaverbeke
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A.G. and C.B. wrote the paper, with input from A.A., E. Boss, E. Bourgois, R.T., S.G.A., P.B., E.B., M.B., S.C., C.d.V., T.O.D., D.E., L.G., D.I., S.K., H.M., F.L., R.P., J.J.P.K., G.P., A.R., G.S.-K., L.S., M.B.S., S.S., P.W., O.Z., D.A., J.B., R.F., E.H., B.R., R.C., I.C., M.C., A.E.K., W.H.C.F.K., M.O., N.P., D.M.P., I.S., T.M.T., J. Vamathevan and J. Vanaverbeke.
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Tara Ocean Foundation., Tara Oceans., European Molecular Biology Laboratory (EMBL). et al. Priorities for ocean microbiome research. Nat Microbiol 7 , 937–947 (2022). https://doi.org/10.1038/s41564-022-01145-5
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Refinement of Rf1-gene localization and development of the new molecular markers for fertility restoration in sunflower
Affiliations.
- 1 Russian Potato Research Center, 23 Lorkh Str., Kraskovo, Moscow Region, Lyubertsy District, Lyubertsy, 140051, Russia. [email protected].
- 2 Russian Potato Research Center, 23 Lorkh Str., Kraskovo, Moscow Region, Lyubertsy District, Lyubertsy, 140051, Russia.
- 3 Russian State Agrarian University Moscow Timiryazev Agricultural Academy, 49 Timiryazevskaya Street, Moscow, 127550, Russia.
- 4 Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, 1 Leninskie Gory Str., bld. 40, Moscow, 119992, Russia.
- 5 FSBSI Federal scientific center "V.S. Pustovoit All-Russian Research Institute of Oil crops", 17 imeny Filatova Str, Krasnodar, 350038, Russia.
- 6 Tsitsin Main Botanical Garden Russian Academy of Science, 4 Botanicheskaya Str, Moscow, 127276, Russia.
- 7 National Medical Research Center for Therapy and Preventive Medicine, 10 Petroverigsky Per., bld. 3, Moscow, 101000, Russia.
- 8 The N.I. Vavilov All-Russian Research Institute of Plant Genetic Resources, 42, 44, Bolshaya Morskaya, Str., Saint Petersburg, 190000, Russia.
- 9 Breeding and seed production company "Agroplazma", 71 Krasnykh Partizan Str, Krasnodar, 350012, Russia.
- 10 All-Russia Rice Research Institute, 3 Belozernyy poselok, Krasnodar, 350921, Russia.
- 11 Institute of General Genetics Russian Academy of Science, 3 Gubkina Str, Moscow, 119333, Russia.
- PMID: 37453962
- DOI: 10.1007/s11033-023-08646-4
Background: Ability to restore male fertility is important trait for sunflower breeding. The most commonly used fertility restoration gene in the production of sunflower hybrids is Rf1. The localization of Rf1 on the linkage group 13 has been previously shown, however, its exact position, its sequence and molecular mechanism for fertility restoration remain unknown. Therefore, several markers linked to Rf1 gene, commonly used for MAS, don't always allow to identify the genotype of plants. For this reason, the search for new markers and precise localization of the Rf1 gene is an urgent task.
Methods and results: Based on previously identified single nucleotide polymorphisms (SNPs) at LG13, significantly associated with the ability to restore male fertility, two markers have been developed that have performed well after careful evaluation. These markers, together with other Rf1 markers, were applied for genotyping 72 diversity panel accessions and 291 individuals of F2 segregating population, obtained from crossing the cytoplasmic male sterility (CMS) AHO33 and restorer RT085HO lines. The analysis revealed no recombinants between Rf1 gene and SRF833 marker, the distance between Rf1 and SRF122 marker was 1.0 cM.
Conclusions: Data obtained made it possible to specify the localization of the Rf1 gene and reduce the list of candidate genes to the 3 closely linked PPR-genes spanning a total of 59 Kb. However, it cannot be ruled out that analysis of the candidate region in the genome of fertility restorer lines can reveal new candidate genes in this locus that are absent in the cytoplasmic male sterility maintainer reference sequence.
Keywords: Cytoplasmic male sterility; Fertility restoration; Genetic map; Molecular marker; Rf1 gene; Sunflower.
© 2023. The Author(s), under exclusive licence to Springer Nature B.V.
- Fertility / genetics
- Genes, Plant / genetics
- Genetic Markers / genetics
- Helianthus* / genetics
- Plant Breeding
- Plant Infertility / genetics
- Genetic Markers
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Mathematical Foundations of the Golden Rule. II. Dynamic Case
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This paper extends the earlier research of the Golden Rule in the static case [2] to the dynamic one. The main idea is to use the Germeier convolution of the payoff functions of players within the framework of antagonistic positional differential games in quasi motions and guiding control.
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Zhukovskiy, V.I., Smirnova, L.V. & Gorbatov, A.S. Mathematical Foundations of the Golden Rule. II. Dynamic Case. Autom Remote Control 79 , 1929–1952 (2018). https://doi.org/10.1134/S0005117918100156
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Background: Ability to restore male fertility is important trait for sunflower breeding. The most commonly used fertility restoration gene in the production of sunflower hybrids is Rf1. The localization of Rf1 on the linkage group 13 has been previously shown, however, its exact position, its sequence and molecular mechanism for fertility restoration remain unknown.
This paper extends the earlier research of the Golden Rule in the static case [2] to the dynamic one. The main idea is to use the Germeier convolution of the payoff functions of players within the framework of antagonistic positional differential games in quasi motions and guiding control.
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