jabref systematic literature review

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Conducting a Systematic Literature Review Provider   Researcher Development Programme

Expand your knowledge of systematic literature reviews. Exporting data from repositories, establishing a unique naming convention, knowledge of JabRef, collating all studies using JabRef, data handling, screening studies using JabRef, creating inclusion and exclusion criteria

Duration 1 full day

Course type workshop, booking status waiting list, is this course right for me.

Target Audience: Postgraduate Researchers

By the end of the workshop participants will be able to: • determine researchers working on similar fields related to their research topic and PhD dissertation.

• clarify the state of knowledge, identify connections, and areas of potential further research.

• build a network due to identified researchers and their published research.

• develop a platform for motivated PGR students to produce succinct excellent review papers in the future.

This course will take place in a computer lab, however, it is suggested that PGRs bring their own laptops to the workshop just in case a computer is not working. 

Prerequisites

Pg certificate in researcher professional development.

All postgraduate research students are eligible to access the Researcher Development Programme workshops. This workshop can contribute towards the PG Certificate in Researcher Professional Development (PG Cert RPD).

You can find credit and class information in the Researcher Development Programme Handbook and in NEPTUNE (Engineering, HaSS) or SPIDER (Science).

Please check with your department or Supervisor to confirm if you are enrolled on the PG Cert RPD and how many credits you are expected to achieve if you are unsure.

A Systematic Literature Review on Numerical Weather Prediction Models and Provenance Data

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• First Online: 23 July 2022
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• Alper Tufek   ORCID: orcid.org/0000-0003-1279-9318 12 &
• Mehmet S. Aktas   ORCID: orcid.org/0000-0001-7908-5067 12  

Part of the book series: Lecture Notes in Computer Science ((LNCS,volume 13380))

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• International Conference on Computational Science and Its Applications

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The weather has been an important issue for mankind since the earliest times. The need to predict the weather accurately increases every day when considering the effects of natural disasters such as floods, hails, extreme winds, landslides, etc. on many sectors from transportation to agriculture, which all depend on weather conditions. Numerical weather prediction (NWP) models, today’s the de-facto tools used for weather forecasting, are scientific software that models atmospheric dynamics in accordance with the laws of physics. These models perform complex mathematical calculations on very large data (gridded) and require high computational power. For this reason, NWP models are scientific software that is usually run on distributed infrastructures and often takes hours to finish. On the other hand, provenance is another key concept as important as weather prediction. Provenance can be briefly defined as metadata that provides information about any kind of data, process, or workflow. In this SLR study, a comprehensive screening of literature was performed to discover primary studies that directly suggest systematic provenance structures for NWP models, or primary studies in which at least a case study was implemented on an NWP model even if considered in a broader perspective. Afterward, these primary studies were thoroughly examined in line with specific research questions, and the findings were presented in a systematic manner. An SLR study on primary studies which combines the two domains of NWP models and provenance research has never been done before. So we think that this work will fill an important gap in literature regarding studies combining the two domains and increase the interest in the subject.

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Alper Tufek & Mehmet S. Aktas

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Osvaldo Gervasi

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Beniamino Murgante

Østfold University College, Halden, Norway

Sanjay Misra

University of Minho, Braga, Portugal

Ana Maria A. C. Rocha

University of Cagliari, Cagliari, Italy

Chiara Garau

A Appendix: Relevant Primary Studies

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Tufek, A., Aktas, M.S. (2022). A Systematic Literature Review on Numerical Weather Prediction Models and Provenance Data. In: Gervasi, O., Murgante, B., Misra, S., Rocha, A.M.A.C., Garau, C. (eds) Computational Science and Its Applications – ICCSA 2022 Workshops. ICCSA 2022. Lecture Notes in Computer Science, vol 13380. Springer, Cham. https://doi.org/10.1007/978-3-031-10542-5_42

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How-to conduct a systematic literature review: A quick guide for computer science research

Angela carrera-rivera.

a Faculty of Engineering, Mondragon University

William Ochoa

Felix larrinaga.

b Design Innovation Center(DBZ), Mondragon University

Associated Data

• No data was used for the research described in the article.

Performing a literature review is a critical first step in research to understanding the state-of-the-art and identifying gaps and challenges in the field. A systematic literature review is a method which sets out a series of steps to methodically organize the review. In this paper, we present a guide designed for researchers and in particular early-stage researchers in the computer-science field. The contribution of the article is the following:

• • Clearly defined strategies to follow for a systematic literature review in computer science research, and
• • Algorithmic method to tackle a systematic literature review.

Graphical abstract

Specifications table

Method details

A Systematic Literature Review (SLR) is a research methodology to collect, identify, and critically analyze the available research studies (e.g., articles, conference proceedings, books, dissertations) through a systematic procedure [12] . An SLR updates the reader with current literature about a subject [6] . The goal is to review critical points of current knowledge on a topic about research questions to suggest areas for further examination [5] . Defining an “Initial Idea” or interest in a subject to be studied is the first step before starting the SLR. An early search of the relevant literature can help determine whether the topic is too broad to adequately cover in the time frame and whether it is necessary to narrow the focus. Reading some articles can assist in setting the direction for a formal review., and formulating a potential research question (e.g., how is semantics involved in Industry 4.0?) can further facilitate this process. Once the focus has been established, an SLR can be undertaken to find more specific studies related to the variables in this question. Although there are multiple approaches for performing an SLR ( [5] , [26] , [27] ), this work aims to provide a step-by-step and practical guide while citing useful examples for computer-science research. The methodology presented in this paper comprises two main phases: “Planning” described in section 2, and “Conducting” described in section 3, following the depiction of the graphical abstract.

Defining the protocol is the first step of an SLR since it describes the procedures involved in the review and acts as a log of the activities to be performed. Obtaining opinions from peers while developing the protocol, is encouraged to ensure the review's consistency and validity, and helps identify when modifications are necessary [20] . One final goal of the protocol is to ensure the replicability of the review.

Define PICOC and synonyms

The PICOC (Population, Intervention, Comparison, Outcome, and Context) criteria break down the SLR's objectives into searchable keywords and help formulate research questions [ 27 ]. PICOC is widely used in the medical and social sciences fields to encourage researchers to consider the components of the research questions [14] . Kitchenham & Charters [6] compiled the list of PICOC elements and their corresponding terms in computer science, as presented in Table 1 , which includes keywords derived from the PICOC elements. From that point on, it is essential to think of synonyms or “alike” terms that later can be used for building queries in the selected digital libraries. For instance, the keyword “context awareness” can also be linked to “context-aware”.

Planning Step 1 “Defining PICOC keywords and synonyms”.

Formulate research questions

Clearly defined research question(s) are the key elements which set the focus for study identification and data extraction [21] . These questions are formulated based on the PICOC criteria as presented in the example in Table 2 (PICOC keywords are underlined).

Research questions examples.

Select digital library sources

The validity of a study will depend on the proper selection of a database since it must adequately cover the area under investigation [19] . The Web of Science (WoS) is an international and multidisciplinary tool for accessing literature in science, technology, biomedicine, and other disciplines. Scopus is a database that today indexes 40,562 peer-reviewed journals, compared to 24,831 for WoS. Thus, Scopus is currently the largest existing multidisciplinary database. However, it may also be necessary to include sources relevant to computer science, such as EI Compendex, IEEE Xplore, and ACM. Table 3 compares the area of expertise of a selection of databases.

Planning Step 3 “Select digital libraries”. Description of digital libraries in computer science and software engineering.

Define inclusion and exclusion criteria

Authors should define the inclusion and exclusion criteria before conducting the review to prevent bias, although these can be adjusted later, if necessary. The selection of primary studies will depend on these criteria. Articles are included or excluded in this first selection based on abstract and primary bibliographic data. When unsure, the article is skimmed to further decide the relevance for the review. Table 4 sets out some criteria types with descriptions and examples.

Planning Step 4 “Define inclusion and exclusion criteria”. Examples of criteria type.

Define the Quality Assessment (QA) checklist

Assessing the quality of an article requires an artifact which describes how to perform a detailed assessment. A typical quality assessment is a checklist that contains multiple factors to evaluate. A numerical scale is used to assess the criteria and quantify the QA [22] . Zhou et al. [25] presented a detailed description of assessment criteria in software engineering, classified into four main aspects of study quality: Reporting, Rigor, Credibility, and Relevance. Each of these criteria can be evaluated using, for instance, a Likert-type scale [17] , as shown in Table 5 . It is essential to select the same scale for all criteria established on the quality assessment.

Planning Step 5 “Define QA assessment checklist”. Examples of QA scales and questions.

Define the “Data Extraction” form

The data extraction form represents the information necessary to answer the research questions established for the review. Synthesizing the articles is a crucial step when conducting research. Ramesh et al. [15] presented a classification scheme for computer science research, based on topics, research methods, and levels of analysis that can be used to categorize the articles selected. Classification methods and fields to consider when conducting a review are presented in Table 6 .

Planning Step 6 “Define data extraction form”. Examples of fields.

The data extraction must be relevant to the research questions, and the relationship to each of the questions should be included in the form. Kitchenham & Charters [6] presented more pertinent data that can be captured, such as conclusions, recommendations, strengths, and weaknesses. Although the data extraction form can be updated if more information is needed, this should be treated with caution since it can be time-consuming. It can therefore be helpful to first have a general background in the research topic to determine better data extraction criteria.

After defining the protocol, conducting the review requires following each of the steps previously described. Using tools can help simplify the performance of this task. Standard tools such as Excel or Google sheets allow multiple researchers to work collaboratively. Another online tool specifically designed for performing SLRs is Parsif.al 1 . This tool allows researchers, especially in the context of software engineering, to define goals and objectives, import articles using BibTeX files, eliminate duplicates, define selection criteria, and generate reports.

Build digital library search strings

Search strings are built considering the PICOC elements and synonyms to execute the search in each database library. A search string should separate the synonyms with the boolean operator OR. In comparison, the PICOC elements are separated with parentheses and the boolean operator AND. An example is presented next:

(“Smart Manufacturing” OR “Digital Manufacturing” OR “Smart Factory”) AND (“Business Process Management” OR “BPEL” OR “BPM” OR “BPMN”) AND (“Semantic Web” OR “Ontology” OR “Semantic” OR “Semantic Web Service”) AND (“Framework” OR “Extension” OR “Plugin” OR “Tool”

Gather studies

Databases that feature advanced searches enable researchers to perform search queries based on titles, abstracts, and keywords, as well as for years or areas of research. Fig. 1 presents the example of an advanced search in Scopus, using titles, abstracts, and keywords (TITLE-ABS-KEY). Most of the databases allow the use of logical operators (i.e., AND, OR). In the example, the search is for “BIG DATA” and “USER EXPERIENCE” or “UX” as a synonym.

Example of Advanced search on Scopus.

In general, bibliometric data of articles can be exported from the databases as a comma-separated-value file (CSV) or BibTeX file, which is helpful for data extraction and quantitative and qualitative analysis. In addition, researchers should take advantage of reference-management software such as Zotero, Mendeley, Endnote, or Jabref, which import bibliographic information onto the software easily.

Study Selection and Refinement

The first step in this stage is to identify any duplicates that appear in the different searches in the selected databases. Some automatic procedures, tools like Excel formulas, or programming languages (i.e., Python) can be convenient here.

In the second step, articles are included or excluded according to the selection criteria, mainly by reading titles and abstracts. Finally, the quality is assessed using the predefined scale. Fig. 2 shows an example of an article QA evaluation in Parsif.al, using a simple scale. In this scenario, the scoring procedure is the following YES= 1, PARTIALLY= 0.5, and NO or UNKNOWN = 0 . A cut-off score should be defined to filter those articles that do not pass the QA. The QA will require a light review of the full text of the article.

Performing quality assessment (QA) in Parsif.al.

Data extraction

Those articles that pass the study selection are then thoroughly and critically read. Next, the researcher completes the information required using the “data extraction” form, as illustrated in Fig. 3 , in this scenario using Parsif.al tool.

Example of data extraction form using Parsif.al.

The information required (study characteristics and findings) from each included study must be acquired and documented through careful reading. Data extraction is valuable, especially if the data requires manipulation or assumptions and inferences. Thus, information can be synthesized from the extracted data for qualitative or quantitative analysis [16] . This documentation supports clarity, precise reporting, and the ability to scrutinize and replicate the examination.

Analysis and Report

The analysis phase examines the synthesized data and extracts meaningful information from the selected articles [10] . There are two main goals in this phase.

The first goal is to analyze the literature in terms of leading authors, journals, countries, and organizations. Furthermore, it helps identify correlations among topic s . Even when not mandatory, this activity can be constructive for researchers to position their work, find trends, and find collaboration opportunities. Next, data from the selected articles can be analyzed using bibliometric analysis (BA). BA summarizes large amounts of bibliometric data to present the state of intellectual structure and emerging trends in a topic or field of research [4] . Table 7 sets out some of the most common bibliometric analysis representations.

Techniques for bibliometric analysis and examples.

Several tools can perform this type of analysis, such as Excel and Google Sheets for statistical graphs or using programming languages such as Python that has available multiple  data visualization libraries (i.e. Matplotlib, Seaborn). Cluster maps based on bibliographic data(i.e keywords, authors) can be developed in VosViewer which makes it easy to identify clusters of related items [18] . In Fig. 4 , node size is representative of the number of papers related to the keyword, and lines represent the links among keyword terms.

[1] Keyword co-relationship analysis using clusterization in vos viewer.

This second and most important goal is to answer the formulated research questions, which should include a quantitative and qualitative analysis. The quantitative analysis can make use of data categorized, labelled, or coded in the extraction form (see Section 1.6). This data can be transformed into numerical values to perform statistical analysis. One of the most widely employed method is frequency analysis, which shows the recurrence of an event, and can also represent the percental distribution of the population (i.e., percentage by technology type, frequency of use of different frameworks, etc.). Q ualitative analysis includes the narration of the results, the discussion indicating the way forward in future research work, and inferring a conclusion.

Finally, the literature review report should state the protocol to ensure others researchers can replicate the process and understand how the analysis was performed. In the protocol, it is essential to present the inclusion and exclusion criteria, quality assessment, and rationality beyond these aspects.

The presentation and reporting of results will depend on the structure of the review given by the researchers conducting the SLR, there is no one answer. This structure should tie the studies together into key themes, characteristics, or subgroups [ 28 ].

SLR can be an extensive and demanding task, however the results are beneficial in providing a comprehensive overview of the available evidence on a given topic. For this reason, researchers should keep in mind that the entire process of the SLR is tailored to answer the research question(s). This article has detailed a practical guide with the essential steps to conducting an SLR in the context of computer science and software engineering while citing multiple helpful examples and tools. It is envisaged that this method will assist researchers, and particularly early-stage researchers, in following an algorithmic approach to fulfill this task. Finally, a quick checklist is presented in Appendix A as a companion of this article.

CRediT author statement

Angela Carrera-Rivera: Conceptualization, Methodology, Writing-Original. William Ochoa-Agurto : Methodology, Writing-Original. Felix Larrinaga : Reviewing and Supervision Ganix Lasa: Reviewing and Supervision.

Declaration of Competing Interest

The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

Acknowledgments

Funding : This project has received funding from the European Union's Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie Grant No. 814078.

Carrera-Rivera, A., Larrinaga, F., & Lasa, G. (2022). Context-awareness for the design of Smart-product service systems: Literature review. Computers in Industry, 142, 103730.

1 https://parsif.al/

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Natural language processing in dermatology: A systematic literature review and state of the art

Affiliations.

• 1 Dermatology Unit, Azienda Unità Sanitaria Locale-IRCCS di Reggio Emilia, Reggio Emilia, Italy.
• 2 University of Modena and Reggio Emilia, Modena, Italy.
• 3 Azienda Unità Sanitaria Locale-IRCCS di Reggio Emilia, Skin Cancer Center, Reggio Emilia, Italy.
• 4 Melanoma and Skin Cancer Unit, Department of Dermatology, Escuela de Medicina, Pontificia Universidad Católica de Chile, Santiago, Chile.
• 5 Dermatology Clinic, IRCCS San Raffaele Scientific Institute, Milan, Italy.
• 6 Department of Clinical Internal, Anesthesiological and Cardiovascular Sciences, Dermatology Clinic, Sapienza University of Rome, Rome, Italy.
• PMID: 39150311
• DOI: 10.1111/jdv.20286

Background: Natural Language Processing (NLP) is a field of both computational linguistics and artificial intelligence (AI) dedicated to analysis and interpretation of human language.

Objectives: This systematic review aims at exploring all the possible applications of NLP techniques in the dermatological setting.

Methods: Extensive search on 'natural language processing' and 'dermatology' was performed on MEDLINE and Scopus electronic databases. Only journal articles with full text electronically available and English translation were considered. The PICO (Population, Intervention or exposure, Comparison, Outcome) algorithm was applied to our study protocol.

Results: Natural Language Processing (NLP) techniques have been utilized across various dermatological domains, including atopic dermatitis, acne/rosacea, skin infections, non-melanoma skin cancers (NMSCs), melanoma and skincare. There is versatility of NLP in data extraction from diverse sources such as electronic health records (EHRs), social media platforms and online forums. We found extensive utilization of NLP techniques across diverse dermatological domains, showcasing its potential in extracting valuable insights from various sources and informing diagnosis, treatment optimization, patient preferences and unmet needs in dermatological research and clinical practice.

Conclusions: While NLP shows promise in enhancing dermatological research and clinical practice, challenges such as data quality, ambiguity, lack of standardization and privacy concerns necessitate careful consideration. Collaborative efforts between dermatologists, data scientists and ethicists are essential for addressing these challenges and maximizing the potential of NLP in dermatology.

© 2024 The Author(s). Journal of the European Academy of Dermatology and Venereology published by John Wiley & Sons Ltd on behalf of European Academy of Dermatology and Venereology.

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Analysing near-miss incidents in construction: a systematic literature review.

1. Introduction

• Q 1 —Are near-miss events in construction industry the subject of scientific research?
• Q 2 —What methods have been employed thus far to obtain information on near misses and systems for recording incidents in construction companies?
• Q 3 —What methods have been used to analyse the information and figures obtained?
• Q 4 —What are the key aspects of near misses in the construction industry that have been of interest to the researchers?

2. Definition of Near-Miss Events

3. research methodology, 4.1. a statistical analysis of publications, 4.2. methods used to obtain information about near misses, 4.2.1. traditional methods.

• Traditional registration forms
• Computerized systems for the recording of events
• Surveys and interviews

4.2.2. Real-Time Monitoring Systems

• Employee-tracking systems
• Video surveillance systems
• Wearable technology
• Motion sensors

4.3. Methods Used to Analyse the Information and Figures That Have Been Obtained

4.3.1. quantitative and qualitative statistical methods, 4.3.2. analysis using artificial intelligence (ai), 4.3.3. building information modelling, 4.4. key aspects of near-miss investigations in the construction industry, 4.4.1. occupational risk assessment, 4.4.2. causes of hazards in construction, 4.4.3. time series of near misses, 4.4.4. material factors of construction processes, 4.5. a comprehensive overview of the research questions and references on near misses in the construction industry, 5. discussion, 5.1. interest of researchers in near misses in construction (question 1), 5.2. methods used to obtain near-miss information (question 2), 5.3. methods used to analyse the information and data sets (question 3), 5.4. key aspects of near-miss investigations in the construction industry (question 4), 6. conclusions.

• A quantitative analysis of the Q 1 question has revealed a positive trend, namely that there is a growing interest among researchers in studying near misses in construction. The greatest interest in NM topics is observed in the United States of America, China, the United Kingdom, Australia, Hong Kong, and Germany. Additionally, there has been a recent emergence of interest in Poland. The majority of articles are mainly published in journals such as Safety Science (10), Journal of Construction Engineering and Management (8), and Automation in Construction (5);
• The analysis of question Q 2 illustrates that traditional paper-based event registration systems are currently being superseded by advanced IT systems. However, both traditional and advanced systems are subject to the disadvantage of relying on employee-reported data, which introduces a significant degree of uncertainty regarding in the quality of the information provided. A substantial proportion of the data and findings presented in the studies was obtained through surveys and interviews. The implementation of real-time monitoring systems is becoming increasingly prevalent in construction sites. The objective of such systems is to provide immediate alerts in the event of potential hazards, thereby preventing a significant number of near misses. Real-time monitoring systems employ a range of technologies, including ultrasonic technology, radio frequency identification (RFID), inertial measurement units (IMUs), real-time location systems (RTLSs), industrial cameras, wearable technology, motion sensors, and advanced IT technologies, among others;
• The analysis of acquired near-miss data is primarily conducted through the utilisation of quantitative and qualitative statistical methods, as evidenced by the examination of the Q 3 question. In recent years, research utilising artificial intelligence (AI) has made significant advances. The most commonly employed artificial intelligence techniques include text mining, machine learning, and artificial neural networks. The growing deployment of Building Information Modelling (BIM) technology has precipitated a profound transformation in the safety management of construction sites, with the advent of sophisticated tools for the identification and management of hazardous occurrences;
• In response to question Q 4 , the study of near misses in the construction industry has identified several key aspects that have attracted the attention of researchers. These include the utilisation of both quantitative and qualitative methodologies for risk assessment, the analysis of the causes of hazards, the identification of accident precursors through the creation of time series, and the examination of material factors pertaining to construction processes. Researchers are focusing on the utilisation of both databases and advanced technologies, such as real-time location tracking, for the assessment and analysis of occupational risks. Techniques such as Analytic Hierarchy Process (AHP) and clustering facilitate a comprehensive assessment and categorisation of incidents, thereby enabling the identification of patterns and susceptibility to specific types of accidents. Moreover, the impact of a company’s safety climate and organisational culture on the frequency and characteristics of near misses represents a pivotal area of investigation. The findings of this research indicate that effective safety management requires a holistic approach that integrates technology, risk management and safety culture, with the objective of reducing accidents and enhancing overall working conditions on construction sites.

7. Gaps and Future Research Directions, Limitations

• Given the diversity and variability of construction sites and the changing conditions and circumstances of work, it is essential to create homogeneous clusters of near misses and to analyse the phenomena within these clusters. The formation of such clusters may be contingent upon the direct causes of the events in question;
• Given the inherently dynamic nature of construction, it is essential to analyse time series of events that indicate trends in development and safety levels. The numerical characteristics of these trends may be used to construct predictive models for future accidents and near misses;
• The authors have identified potential avenues for future research, which could involve the development of mathematical models using techniques such as linear regression, artificial intelligence, and machine learning. The objective of these models is to predict the probable timing of occupational accidents within defined incident categories, utilising data from near misses. Moreover, efforts are being made to gain access to the hazardous incident recording systems of different construction companies, with a view to facilitating comparison of the resulting data;
• One significant limitation of near-miss research is the lack of an integrated database that encompasses a diverse range of construction sites and construction work. A data resource of this nature would be of immense value for the purpose of conducting comprehensive analyses and formulating effective risk management strategies. This issue can be attributed to two factors: firstly, the reluctance of company managers to share their databases with researchers specialising in risk assessment, and secondly, the reluctance of employees to report near-miss incidents. Such actions may result in adverse consequences for employees, including disciplinary action or negative perceptions from managers. This consequently results in the recording of only a subset of incidents, thereby distorting the true picture of safety on the site.

Author Contributions

Institutional review board statement, informed consent statement, data availability statement, conflicts of interest.

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Woźniak, Z.; Hoła, B. Analysing Near-Miss Incidents in Construction: A Systematic Literature Review. Appl. Sci. 2024 , 14 , 7260. https://doi.org/10.3390/app14167260

Woźniak Z, Hoła B. Analysing Near-Miss Incidents in Construction: A Systematic Literature Review. Applied Sciences . 2024; 14(16):7260. https://doi.org/10.3390/app14167260

Woźniak, Zuzanna, and Bożena Hoła. 2024. "Analysing Near-Miss Incidents in Construction: A Systematic Literature Review" Applied Sciences 14, no. 16: 7260. https://doi.org/10.3390/app14167260

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